| NOTICE Information about these applications
is provided as a service. Use of the applications must comply
with the conditions defined by the system originators and/or
distributors.
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Clinical knowledge management and decision support applications on the WWW
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GoPubMed / MeSHPubMed
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Ontology-based medical literature search engine |
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| keywords |
clinical domains |
| Knowledge-based, ontology-based, search engine, medical literature search, semantic, Web 2.0 |
Multiple |
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| developed by |
Transinsight GmbH, Dresden; Bioinformatics Group, Technische Universität,
Dresden
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| commissioned |
2007
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| status |
Available for use on WWW.
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| access |
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| description |
GoPubMed / MeSHPubMed is the first 'intelligent' (Web 2.0)
ontology-based search engine for medicine and medical literature
available on the Internet.
Search results are sorted by the controlled vocabularies GO (Gene Ontology) and MeSH (Medical Subject Headings).
"Classical search engines retrieve documents GoPubMed answers questions!"
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| references |
Doms A, Schroeder M.
GoPubMed: exploring PubMed with the Gene Ontology.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W783-6.
[PubMed]
[PubMed Central]
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"
The biomedical literature grows at a tremendous rate and PubMed comprises already over 15 000 000 abstracts. Finding relevant literature is an important and difficult problem. We introduce GoPubMed, a web server which allows users to explore PubMed search results with the Gene Ontology (GO), a hierarchically structured vocabulary for molecular biology. GoPubMed provides the following benefits: first, it gives an overview of the literature abstracts by categorizing abstracts according to the GO and thus allowing users to quickly navigate through the abstracts by category. Second, it automatically shows general ontology terms related to the original query, which often do not even appear directly in the abstract. Third, it enables users to verify its classification because GO terms are highlighted in the abstracts and as each term is labelled with an accuracy percentage. Fourth, exploring PubMed abstracts with GoPubMed is useful as it shows definitions of GO terms without the need for further look up. GoPubMed is online at www.gopubmed.org. Querying is currently limited to 100 papers per query.
"
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Cord Spreckelsen, Steve Liem, Christof Winter, and Klaus Spitzer.
Cognitive Tools for Medical Knowledge Management.
Information Technology. Special Issue on Medical Informatics, 48(1):33--43, Jan 2006,
[] []
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"
The term cognitive tool was coined for a means especially designed to improve human
cognition. Examples of cognitive tools range from simple mind maps to computer-based assistence
systems. Cognitive tools can play a key role in the knowledge management process. This
paper describes specific requirements for cognitive tools in a medical context, and
presents an implemented framework for enabling medical knowledge management by cognitive tools.
The visualization of semantic networks and the users interaction with these graphical
metaphors play an important role not only in the process of authoring or knowledge e
xternalization, but in the computer-supported application and internalization of medical
knowledge, as well. The paper addresses special methodological aspects, namely: 1) the seamless
integration of formal knowledge representation and informal knowledge documentation, 2)
the introduction of graphical means for interacting with the medical knowledge, and 3)
the mutual support of eLearning and knowledge management. The framework is applied to
complementary fields: 1) a learning system for differential diagnosis in paediatrics
and 2) a tool, which empowers scientific literature retrieval by a graphical visualization
of concept-nets based on the Medical Subject Headings (MeSH). As a result the case
studies show that a generic framework, which supports the visualization of conceptual
structures and allows an easy interaction with a medical knowledge repository can
successfully support very different steps of medical knowledge work and clinical
decision support.
" |
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| contact |
Transinsight GmbH
Tatzberg 47-51
D-01307 Dresden
Germany
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| links |
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| acknowledgements |
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| page history |
Entry on OpenClinical: 16 August 2007
Last main update: 16 August 2007
Design - template v0.2: 24 June 2005. |
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